Mapping of Gene Expression Data onto Pathways
Pathway:
----- Carbohydrate Metabolism
00010 Glycolysis / Gluconeogenesis
00020 Citrate cycle (TCA cycle)
00030 Pentose phosphate pathway
00040 Pentose and glucuronate interconversions
00051 Fructose and mannose metabolism
00052 Galactose metabolism
00053 Ascorbate and aldarate metabolism
00500 Starch and sucrose metabolism
00530 Aminosugars metabolism
00520 Nucleotide sugars metabolism
00620 Pyruvate metabolism
00630 Glyoxylate and dicarboxylate metabolism
00640 Propanoate metabolism
00650 Butanoate metabolism
00660 C5-Branched dibasic acid metabolism
00031 Inositol metabolism
00562 Inositol phosphate metabolism
----- Energy Metabolism
00190 Oxidative phosphorylation
00710 Carbon fixation
00720 Reductive carboxylate cycle (CO2 fixation)
00680 Methane metabolism
00910 Nitrogen metabolism
00920 Sulfur metabolism
----- Lipid Metabolism
00061 Fatty acid biosynthesis
00062 Fatty acid elongation in mitochondria
00071 Fatty acid metabolism
00072 Synthesis and degradation of ketone bodies
00100 Biosynthesis of steroids
00120 Bile acid biosynthesis
00150 Androgen and estrogen metabolism
00561 Glycerolipid metabolism
00564 Glycerophospholipid metabolism
00565 Ether lipid metabolism
00591 Linoleic acid metabolism
00592 alpha-Linolenic acid metabolism
01040 Polyunsaturated fatty acid biosynthesis
----- Nucleotide Metabolism
00230 Purine metabolism
00240 Pyrimidine metabolism
----- Amino Acid Metabolism
00251 Glutamate metabolism
00252 Alanine and aspartate metabolism
00260 Glycine, serine and threonine metabolism
00271 Methionine metabolism
00272 Cysteine metabolism
00280 Valine, leucine and isoleucine degradation
00290 Valine, leucine and isoleucine biosynthesis
00300 Lysine biosynthesis
00310 Lysine degradation
00330 Arginine and proline metabolism
00340 Histidine metabolism
00350 Tyrosine metabolism
00360 Phenylalanine metabolism
00380 Tryptophan metabolism
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
00220 Urea cycle and metabolism of amino groups
----- Metabolism of Other Amino Acids
00410 beta-Alanine metabolism
00430 Taurine and hypotaurine metabolism
00450 Selenoamino acid metabolism
00460 Cyanoamino acid metabolism
00471 D-Glutamine and D-glutamate metabolism
00472 D-Arginine and D-ornithine metabolism
00473 D-Alanine metabolism
00480 Glutathione metabolism
----- Glycan Biosynthesis and Metabolism
00510 N-Glycan biosynthesis
00540 Lipopolysaccharide biosynthesis
00550 Peptidoglycan biosynthesis
----- Biosynthesis of Polyketides and Nonribosomal Peptides
00523 Polyketide sugar unit biosynthesis
01053 Biosynthesis of siderophore group nonribosomal peptides
----- Metabolism of Cofactors and Vitamins
00730 Thiamine metabolism
00740 Riboflavin metabolism
00750 Vitamin B6 metabolism
00760 Nicotinate and nicotinamide metabolism
00770 Pantothenate and CoA biosynthesis
00780 Biotin metabolism
00785 Lipoic acid metabolism
00790 Folate biosynthesis
00670 One carbon pool by folate
00860 Porphyrin and chlorophyll metabolism
00130 Ubiquinone biosynthesis
----- Biosynthesis of Secondary Metabolites
00900 Terpenoid biosynthesis
00903 Limonene and pinene degradation
00940 Phenylpropanoid biosynthesis
00941 Flavonoid biosynthesis
00950 Alkaloid biosynthesis I
00960 Alkaloid biosynthesis II
00311 Penicillin and cephalosporin biosynthesis
00521 Streptomycin biosynthesis
00401 Novobiocin biosynthesis
----- Xenobiotics Biodegradation and Metabolism
00930 Caprolactam degradation
00621 Biphenyl degradation
00622 Toluene and xylene degradation
00361 gamma-Hexachlorocyclohexane degradation
00641 3-Chloroacrylic acid degradation
00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation
00631 1,2-Dichloroethane degradation
00643 Styrene degradation
00627 1,4-Dichlorobenzene degradation
00626 Naphthalene and anthracene degradation
00642 Ethylbenzene degradation
00628 Fluorene degradation
00629 Carbazole degradation
00632 Benzoate degradation via CoA ligation
00362 Benzoate degradation via hydroxylation
00791 Atrazine degradation
00363 Bisphenol A degradation
00624 1- and 2-Methylnaphthalene degradation
----- Transcription
03020 RNA polymerase
----- Translation
03010 Ribosome
00970 Aminoacyl-tRNA biosynthesis
----- Folding, Sorting and Degradation
03060 Protein export
03090 Type II secretion system
----- Replication and Repair
03030 DNA polymerase
----- Membrane Transport
02010 ABC transporters
----- Signal Transduction
02020 Two-component system
Experiment:
Original_TRASH_in_vitro
Original_TRASH_in_vivo
D_109
D_111891
D_111895
D_121940
D_124196
D_241
D_59
5CL_PZA
ARP4
Amikacin
Amp
Antimycin
Ascididemin_Nat_prod
BZA
CCCP
CPZ
Cap
Cephalexin
Cerulenin
Clofazimine
Clotrimazole
DCCD
DIPED
DNP
DTNB
DTT
Deferoxamine
Dipyridyl
EMB
Econazole
Eta
GSNO
GSNO_CFZ
GSNO_CPZ
GSNO_KCN
GSNO_menadione
H2O2
INH
KCN
Levo
Min_med__succinate_
Mtm
NRP_1
NaN3
Nam
Nigericin
Novobiocin
Oflox
PA_1
PA_21
PA824
PZA
Palmitate
Procept_6776
Procept_6778
Rif
Rifp
Rox
SM
Succinate
TLM
TRC
TRZ
Tet
UV
Valinomycin
Verapamil
ZnSO4
menadione
mercaptoethanol
methoxatin
Vosk_Day_0
Vosk_Day_6
Vosk_Day_8
Vosk_Day_14
Vosk_Day_24
Vosk_Day_60
Vosk_Day_4_NRP
Vosk_Day_6_NRP
Vosk_Day_8_NRP
Vosk_Day_10_NRP
Vosk_Day_12_NRP
Vosk_Day_14_NRP
Vosk_Day_20_NRP
Vosk_Day_30_NRP
Vosk_Day_80_NRP
Naive_Macrophage_4hrs
Naive_Macrophage_24hrs
Naive_Macrophage_24hrs_oligo
Naive_Macrophage_48hrs
Activated_Macrophage_4hrs
Activated_Macrophage_24hrs
Activated_Macrophage_24hrs_oligo
Activated_Macrophage_48hrs
Betts_Starvation_4hrs
Betts_Starvation_24hrs
Betts_Starvation_96hrs